Browse our latest Computational and Systems Biology articles

Page 61 of 131
    1. Computational and Systems Biology
    2. Neuroscience

    Neural correlates and determinants of approach–avoidance conflict in the prelimbic prefrontal cortex

    Jose A Fernandez-Leon, Douglas S Engelke ... Fabricio H Do Monte
    A combination of electrophysiological and optogenetic approaches revealed a causal role for glutamatergic neurons in the prelimbic cortex in regulating individual differences in decision-making strategies during a threat-avoidance vs. reward-approach conflict paradigm in rats.
    1. Computational and Systems Biology

    Fibroblast mechanotransduction network predicts targets for mechano-adaptive infarct therapies

    Jesse D Rogers, William J Richardson
    Mechanotransduction signaling analysis suggests that mechanical tension can sensitize, desensitize, and reverse cell responses to biochemical agonists, as well as provide mechano-adaptive targets for regionally specific drug responses.
    1. Computational and Systems Biology
    2. Neuroscience

    An image reconstruction framework for characterizing initial visual encoding

    Ling-Qi Zhang, Nicolas P Cottaris, David H Brainard
    A computational model of the initial visual encoding together with Bayesian image reconstruction quantifies how that encoding, combined with the statistical regularities of natural images, shapes key aspects of visual perception.
    1. Computational and Systems Biology
    2. Neuroscience

    Human interictal epileptiform discharges are bidirectional traveling waves echoing ictal discharges

    Elliot H Smith, Jyun-you Liou ... John D Rolston
    Large bursts of brain activity in patients with epilepsy are geometrically related to seizure propagation.
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    Comprehensive interrogation of the ADAR2 deaminase domain for engineering enhanced RNA editing activity and specificity

    Dhruva Katrekar, Yichen Xiang ... Prashant Mali
    A deep mutational scan of the ADAR2 deaminase domain creates a map for designing tailored ADAR2 variants, and splitting the deaminase between residues 468 and 469 enables highly transcript-specific RNA editing.
    1. Computational and Systems Biology
    2. Neuroscience

    The sleep-wake distribution contributes to the peripheral rhythms in PERIOD-2

    Marieke MB Hoekstra, Maxime Jan ... Paul Franken
    Sleep-wake patterns, together with a suprachiasmatic nuclei-independent circadian factor, are necessary and sufficient to maintain high-amplitude nychthemeral rhythms in PERIOD-2.
    1. Computational and Systems Biology
    2. Neuroscience

    Sex differences in learning from exploration

    Cathy S Chen, Evan Knep ... Nicola M Grissom
    A new computational analysis of decision making in mice shows sex biases in value-updating while exploring unknown options, with male mice tending to explore longer than females due to updating values more slowly.
    1. Computational and Systems Biology
    2. Evolutionary Biology

    Predicting bacterial promoter function and evolution from random sequences

    Mato Lagator, Srdjan Sarikas ... Gašper Tkačik
    An inferred mechanistic model that connects sequence (genotype) to function (constitutive gene expression phenotype) for any random sequence in Escherichia coli reveals the structure of constitutive promoters and how they evolve.
    1. Computational and Systems Biology
    2. Medicine

    Personalized computational heart models with T1-mapped fibrotic remodeling predict sudden death risk in patients with hypertrophic cardiomyopathy

    Ryan P O'Hara, Edem Binka ... Natalia A Trayanova
    Personalized virtual-heart technology for arrhythmia risk assessment could transform the management of hypertrophic cardiomyopathy patients, eliminating many unnecessary primary-prevention defibrillator deployments while ensuring patients at high risk for arrhythmia are adequately protected.
    1. Computational and Systems Biology
    2. Medicine

    A human-based multi-gene signature enables quantitative drug repurposing for metabolic disease

    James A Timmons, Andrew Anighoro ... Stuart M Phillips
    Optimising the use of transcriptomics enables screening of thousands of compounds and illustrates an approach that yields quantitative pharmacology at the single-gene and pathway level.