Browse our latest Computational and Systems Biology articles

Page 58 of 131
    1. Computational and Systems Biology
    2. Evolutionary Biology

    Heterogeneity of the GFP fitness landscape and data-driven protein design

    Louisa Gonzalez Somermeyer, Aubin Fleiss ... Fyodor A Kondrashov
    Orthologous proteins display different mutational robustness that can be leveraged to improve prediction of functional sequences.
    1. Computational and Systems Biology
    2. Evolutionary Biology

    Machine Learning: Lighting up protein design

    Grzegorz Kudla, Marcin Plech
    Using a neural network to predict how green fluorescent proteins respond to genetic mutations illuminates properties that could help design new proteins.
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    1. Computational and Systems Biology
    2. Genetics and Genomics

    Comparative multi-tissue profiling reveals extensive tissue-specificity in transcriptome reprogramming during thermal adaptation

    Noushin Hadadi, Martina Spiljar ... Mirko Trajkovski
    Integrative analysis of multi-tissue transcriptomics data of mice subjected to cold, mild warm or room temperature places the thermal adaptation of individual tissues in a whole-organism perspective.
    1. Computational and Systems Biology
    2. Developmental Biology

    Efficient differentiation of human primordial germ cells through geometric control reveals a key role for Nodal signaling

    Kyoung Jo, Seth Teague ... Idse Heemskerk
    Highly reproducible and efficient human primordial germ cell differentiation was achieved through geometric confinement, which enabled quantitative dissection of the cell signaling driving this differentiation, revealing a major role of Wnt signaling is indirect by inducing Nodal signaling.
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    Genetic variation of putative myokine signaling is dominated by biological sex and sex hormones

    Leandro M Velez, Cassandra Van ... Marcus M Seldin
    Genetic architecture of muscle secreted protein functions are dominated by sex.
    1. Computational and Systems Biology
    2. Physics of Living Systems

    Conformist social learning leads to self-organised prevention against adverse bias in risky decision making

    Wataru Toyokawa, Wolfgang Gaissmaier
    Mathematical modelling and large-scale online experiments revealed that learning from others can induce 'smarter' decisions even when most individuals are biased towards adverse risk aversion.
    1. Computational and Systems Biology

    Learning cortical representations through perturbed and adversarial dreaming

    Nicolas Deperrois, Mihai A Petrovici ... Jakob Jordan
    A cortical model inspired by cognitive theories and deep learning demonstrates how the combination of wakefulness, non-rapid eye movement (NREM), and REM dreams leads to the emergence of robust and semantically organized neuronal representations in higher cortical areas.
    1. Computational and Systems Biology
    2. Neuroscience

    Early lock-in of structured and specialised information flows during neural development

    David P Shorten, Viola Priesemann ... Joseph T Lizier
    In developing neural cell cultures, information flows lock-in early and nodes undertake specialised computational roles.
    1. Cancer Biology
    2. Computational and Systems Biology

    Quantifying chromosomal instability from intratumoral karyotype diversity using agent-based modeling and Bayesian inference

    Andrew R Lynch, Nicholas L Arp ... Mark E Burkard
    Chromosomal instability of cancer can be quantitatively measured by phylogenetic analysis of 200 tumor cells while using evolutionary principles to account for cellular selection.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Contingency and selection in mitochondrial genome dynamics

    Christopher J Nunn, Sidhartha Goyal
    Single-molecule sequencing and mating experiments in yeast reveal key properties of mitochondrial DNA dynamics that inform the fate of mutant mtDNA in cells.