Browse our latest Computational and Systems Biology articles

Page 64 of 131
    1. Computational and Systems Biology
    2. Neuroscience

    A causal role for the right frontal eye fields in value comparison

    Ian Krajbich, Andres Mitsumasu ... Ernst Fehr
    Inhibition of activity in the right frontal eye fields reduces the amplifying effect of gaze in value-based choice.
    1. Computational and Systems Biology

    Protein allocation and utilization in the versatile chemolithoautotroph Cupriavidus necator

    Michael Jahn, Nick Crang ... Elton Paul Hudson
    Proteomics and metabolic modeling revealed that the 'knallgas' bacterium Cupriavidus necator utilizes only a fraction of its proteome and keeps large enzyme reserves as an adaption to variable environments.
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    PP2A/B55α substrate recruitment as defined by the retinoblastoma-related protein p107

    Holly Fowle, Ziran Zhao ... Xavier Graña
    Molecular, cellular, and computational analyses reveal key insights into PP2A/B55α's mechanisms of substrate recruitment and active site engagement, and facilitate identification/validation of new substrates, a step towards understanding PP2A/B55α's role in multiple cellular processes.
    1. Computational and Systems Biology
    2. Epidemiology and Global Health

    Emerging dynamics from high-resolution spatial numerical epidemics

    Olivier Thomine, Samuel Alizon ... Mircea Sofonea
    Countrywide agent-based simulations with building-level resolution reveal the importance of demographic repartition and population density on epidemic dynamics of respiratory infections.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    RNA splicing programs define tissue compartments and cell types at single-cell resolution

    Julia Eve Olivieri, Roozbeh Dehghannasiri ... Julia Salzman
    Comprehensive analysis of alternative splicing from human droplet-based scRNA-seq data identifies genes with regulated splicing conserved in mouse and mouse lemur.
    1. Computational and Systems Biology
    2. Neuroscience

    Phase response analyses support a relaxation oscillator model of locomotor rhythm generation in Caenorhabditis elegans

    Hongfei Ji, Anthony D Fouad ... Christopher Fang-Yen
    Behavioral, optogenetic, and computational modeling analyses show that the roundworm Caenorhabditis elegans uses a relaxation oscillation mechanism to generate rhythmic locomotor patterns.
    1. Computational and Systems Biology
    2. Microbiology and Infectious Disease

    Two different cell-cycle processes determine the timing of cell division in Escherichia coli

    Alexandra Colin, Gabriele Micali ... Sven van Teeffelen
    Chromosome replication and a different inter-division process both contribute to division control during unperturbed growth, but if division is delayed by increasing cell width the inter-division process becomes solely rate-limiting.
    1. Computational and Systems Biology
    2. Neuroscience

    Evolving interpretable plasticity for spiking networks

    Jakob Jordan, Maximilian Schmidt ... Mihai A Petrovici
    Artificial evolution discovers biophysically plausible plasticity rules for spiking networks that perform competitively with and even outperform labor-intensive human-designed models in various learning scenarios, while providing new views on experimental data.
    1. Chromosomes and Gene Expression
    2. Computational and Systems Biology

    circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing

    Zelin Liu, Changyu Tao ... Ence Yang
    Accurate identification and quantification of various circRNA isoforms.
    1. Computational and Systems Biology
    2. Physics of Living Systems

    First-principles model of optimal translation factors stoichiometry

    Jean-Benoît Lalanne, Gene-Wei Li
    A parsimonious biophysical model correctly predicts the conserved expression stoichiometry of core bacterial mRNA translation factors, providing intuitive and quantitative design principles for in vivo pathway construction.